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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
1
Hi-C
1
snATAC-seq
Assay category
6
Transcription
1
3D chromatin structure
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
4
July, 2019
1
October, 2019
1
October, 2022
Available data
274
bam
227
bed narrowPeak
227
bigWig
134
zippedFastqFolder
70
bigBed narrowPeak
49
tagAlign
24
fastq
16
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
8
Homo sapiens
Biosample type
7
tissue
1
cell line
Organ
7
pancreas
1
musculature of body
Project
8
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
6
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
month_released!
December, 2019
BIOSAMPLE
ASSAY
8 results
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total RNA-seq
Hi-C
snATAC-seq
tissue
islet of Langerhans
6
skeletal muscle tissue
1
cell line
Panc1
1
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