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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
5
Hi-C
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
5
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
4
July, 2019
1
October, 2019
Available data
3014
bam
2742
bigWig
1600
tsv
1397
bed narrowPeak
1240
fastq
800
bigBed narrowPeak
286
bed broadPeak
269
bigBed broadPeak
261
bed bed3+
251
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
158
Homo sapiens
Biosample type
157
primary cell
1
cell line
Organ
82
epithelium
81
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
153
HPAP
5
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
target.investigated_as!
broad histone mark
nucleotide modification
BIOSAMPLE
ASSAY
158 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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cell line
Panc1
1
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