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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22Hi-C
Assay category
  • 223D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1March, 2023
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 22Homo sapiens
Biosample type
  • 10tissue
  • 6primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • 6epithelium
  • 6pancreas
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 18AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 21hg19
  • 1GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
files.file_type!
  • bedpe
BIOSAMPLE
ASSAY

22 results

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Clear Filters
Hi-C
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
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