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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 20Hi-C
Assay category
  • 203D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 2August, 2021
  • 2November, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 20Homo sapiens
Biosample type
  • 11tissue
  • 4in vitro differentiated cells
  • 3primary cell
  • 2cell line
Organ
  • 4pancreas
  • 3blood vessel
  • 3epithelium
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 19AMP
  • 1ITG
Genome assembly (visualization)
  • 19hg19
  • 1GRCh38
Lab
  • 16AMP-T2D consortium
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
files.file_type!
  • cool
BIOSAMPLE
ASSAY

20 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
cell line
EndoC_BH11
HepG21
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