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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
1
ChIP-seq
Assay category
3
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
2
October, 2019
1
March, 2019
1
March, 2023
Available data
3389
bam
3166
bigWig
1753
bed narrowPeak
1597
tsv
1355
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Organ
1
blood vessel
1
brain
1
epithelium
1
pancreas
1
vasculature
1
vein
Project
3
AMP
1
ITG
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Katalin Susztak, Upenn
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
lab.title!
Katalin Susztak, Upenn
month_released!
June, 2018
BIOSAMPLE
ASSAY
4 results
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Clear Filters
Hi-C
ChIP-seq
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
medial globus pallidus
1
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