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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
6
Hi-C
6
WGBS
1
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
148
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
6
December, 2019
6
May, 2021
5
July, 2019
5
March, 2020
4
October, 2019
3
August, 2018
3
October, 2022
2
February, 2023
2
November, 2019
2
October, 2018
1
June, 2018
Available data
341
bam
317
bigWig
281
fastq
165
bed narrowPeak
157
tsv
89
bigBed narrowPeak
80
zippedFastqFolder
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
163
Homo sapiens
Biosample type
121
primary cell
36
cell line
4
tissue
2
in vitro differentiated cells
Organ
478
connective tissue
424
pancreas
401
adipose tissue
176
liver
171
heart
162
epithelium
71
blood vessel
71
vasculature
58
artery
58
bone element
26
brain
25
kidney
14
embryo
11
musculature of body
7
limb
5
eye
nerve
2
intestine
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
152
AMP
9
HPAP
2
T1D
Genome assembly (visualization)
153
hg19
146
GRCh38
Lab
154
AMP-T2D consortium
9
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
5
audit script error
organ_slims!
nerve
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
single cell RNA-seq
Hi-C
WGBS
ATAC-seq
RNA microarray
pCHi-C
primary cell
pancreatic alpha cell
10
12
1
6
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 12 more…
cell line
EndoC_BH1
33
1
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
spleen
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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