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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
65
single cell RNA-seq
59
total RNA-seq
42
ATAC-seq
41
WGBS
22
snATAC-seq
20
Hi-C
Assay category
124
Transcription
64
DNA accessibility
41
DNA methylation
20
3D chromatin structure
Date released
141
May, 2022
89
February, 2021
59
August, 2021
19
September, 2020
10
March, 2020
7
February, 2023
4
October, 2019
October, 2022
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
333
Homo sapiens
Biosample type
168
tissue
156
primary cell
7
in vitro differentiated cells
2
cell line
Organ
90
pancreas
88
bone element
83
epithelium
63
kidney
4
skeleton
3
blood vessel
3
heart
3
musculature of body
3
vasculature
2
liver
2
vein
Project
179
AMP
153
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
110
AMP-T2D consortium
58
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
Audit category:
90
inconsistent ontology term
7
audit script error
month_released!
October, 2022
BIOSAMPLE
ASSAY
333 results
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RNA microarray
single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
tissue
bone element
84
kidney
13
49
1
islet of Langerhans
6
2
psoas muscle
2
acetabular part of hip bone
1
+ See 10 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
endothelial cell of umbilical vein
2
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac precursors (cardiac muscle cell)
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
+ See 1 more…
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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