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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
Assay category
6
3D chromatin structure
Date released
3
October, 2022
1
March, 2020
1
November, 2019
1
October, 2019
Available data
428
bam
402
bigWig
257
fastq
247
bed narrowPeak
172
tsv
163
bigBed narrowPeak
90
bed broadPeak
90
bigBed broadPeak
89
bed bed3+
80
zippedFastqFolder
7
bed bedMethyl
7
bigBed bedMethyl
7
tagAlign
6
hic
5
bedpe bed3+
5
csv
5
txt
3
cool
2
hdf5
1
tar
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
0
kidney
Project
3
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
organ_slims!
bone element
BIOSAMPLE
ASSAY
6 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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