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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19Hi-C
Assay category
  • 193D chromatin structure
Date released
  • 10March, 2020
  • October, 2019
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 3142bam
  • 2962bigWig
  • 1628bed narrowPeak
  • 1584tsv
  • 1358fastq
  • 972bigBed narrowPeak
  • 349tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 265bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 19Homo sapiens
Biosample type
  • 10tissue
  • 5primary cell
  • 2cell line
  • 2in vitro differentiated cells
Organ
  • 7pancreas
  • 5epithelium
  • 2blood vessel
  • 2heart
  • 2liver
  • 2musculature of body
  • 2vasculature
  • 1kidney
  • 1vein
Project
  • 15AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 18hg19
  • 1GRCh38
Lab
  • 12AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 3audit script error
  • 3inconsistent ontology term
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

19 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
primary cell
chondrocytes1
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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