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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17Hi-C
Assay category
  • 173D chromatin structure
Date released
  • 9March, 2020
  • 3October, 2019
  • 2August, 2021
  • 1March, 2019
  • 1March, 2023
  • 1November, 2019
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1444tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 252bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 17Homo sapiens
Biosample type
  • 11tissue
  • 4in vitro differentiated cells
  • 1cell line
  • 1primary cell
Organ
  • 7pancreas
  • epithelium
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 16AMP
  • 1ITG
Genome assembly (visualization)
  • 16hg19
  • 1GRCh38
Lab
  • 13AMP-T2D consortium
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4inconsistent ontology term
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

17 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
HepG21
primary cell
chondrocytes1
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