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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16Hi-C
Assay category
  • 163D chromatin structure
Date released
  • 9March, 2020
  • 4October, 2019
  • 2August, 2021
  • 1March, 2023
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 16Homo sapiens
Biosample type
  • 8tissue
  • 4in vitro differentiated cells
  • 3primary cell
  • 1cell line
Organ
  • pancreas
  • 6epithelium
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 15AMP
  • 1ITG
Genome assembly (visualization)
  • 15hg19
  • 1GRCh38
Lab
  • 13AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4inconsistent ontology term
  • 1audit script error
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

16 results

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Hi-C
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
cell line
HepG21
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