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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 15Hi-C
Assay category
  • 153D chromatin structure
Date released
  • 8March, 2020
  • 3October, 2019
  • 2August, 2021
  • 2November, 2019
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 15Homo sapiens
Biosample type
  • 8tissue
  • 4in vitro differentiated cells
  • 2cell line
  • 1primary cell
Organ
  • 2blood vessel
  • 2epithelium
  • 2heart
  • 2liver
  • 2musculature of body
  • 2pancreas
  • 2vasculature
  • 1kidney
  • 1vein
Project
  • 15AMP
Genome assembly (visualization)
  • 15hg19
Lab
  • 13AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

15 results

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Hi-C
tissue
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
islet of Langerhans1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
primary cell
endothelial cell of umbilical vein1
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