Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19Hi-C
Assay category
  • 193D chromatin structure
Date released
  • 8March, 2020
  • 3October, 2022
  • 2August, 2021
  • 2November, 2019
  • 2October, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 19Homo sapiens
Biosample type
  • 11tissue
  • 6primary cell
  • 2cell line
Organ
  • 7pancreas
  • 6epithelium
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2musculature of body
  • 2vein
  • 1kidney
Project
  • 15AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 18hg19
  • 1GRCh38
Lab
  • 12AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

19 results

search-icontable-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego