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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12Hi-C
Assay category
  • 123D chromatin structure
Date released
  • 4March, 2020
  • 3October, 2019
  • 3October, 2022
  • 1March, 2019
  • 1March, 2023
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 12Homo sapiens
Biosample type
  • 5primary cell
  • 4in vitro differentiated cells
  • 3tissue
Organ
  • 5pancreas
  • 4epithelium
  • 1blood vessel
  • 1heart
  • 1vasculature
  • 1vein
Project
  • 8AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 11hg19
  • 1GRCh38
Lab
  • 7AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
Audit category:
  • 4inconsistent ontology term
  • 3audit script error
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

12 results

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Hi-C
primary cell
chondrocytes1
endothelial cell of umbilical vein1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
tissue
heart1
islet of Langerhans1
pancreas1
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