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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 11Hi-C
Assay category
  • 113D chromatin structure
Date released
  • 6March, 2020
  • 2August, 2021
  • 2November, 2019
  • 1October, 2019
Available data
  • 2233bam
  • 2091bigWig
  • 1229tsv
  • 1089bed narrowPeak
  • 728fastq
  • 513bigBed narrowPeak
  • 256tagAlign
  • 197bed broadPeak
  • 166bed bed3+
  • 162bigBed broadPeak
  • 153txt
  • 153zippedFastqFolder
  • 64xls
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1vcf
Organism
  • 11Homo sapiens
Biosample type
  • 8tissue
  • 2cell line
  • 1primary cell
Organ
  • 2blood vessel
  • 2epithelium
  • 2heart
  • 2liver
  • 2musculature of body
  • 2pancreas
  • 2vasculature
  • 1kidney
  • 1vein
Project
  • 11AMP
Genome assembly (visualization)
  • 11hg19
Lab
  • 9AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

11 results

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Hi-C
tissue
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
islet of Langerhans1
cell line
EndoC_BH11
HepG21
primary cell
endothelial cell of umbilical vein1
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