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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
2
pCHi-C
Assay category
84
DNA binding
Target of assay
74
histone
74
histone modification
44
broad histone mark
30
narrow histone mark
10
control
Date released
66
August, 2017
11
November, 2017
7
October, 2017
2
March, 2020
Available data
bam
3164
bigWig
1817
bed narrowPeak
1591
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
86
Homo sapiens
Biosample type
70
tissue
16
in vitro differentiated cells
Organ
22
connective tissue
20
liver
18
brain
15
musculature of body
9
pancreas
8
adipose tissue
Project
86
AMP
Genome assembly (visualization)
23
hg19
Lab
86
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
bigBed bedMethyl
month_released!
December, 2019
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
pCHi-C
tissue
liver
20
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
brain
7
+ See 4 more…
in vitro differentiated cells
adipocyte
14
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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