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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
total RNA-seq
80
single cell RNA-seq
7
ChIP-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
408
Transcription
7
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
3
control
3
histone
3
histone modification
3
narrow histone mark
1
transcription factor
Date released
153
July, 2018
93
August, 2017
43
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
0
ibed
Organism
423
Homo sapiens
Biosample type
279
tissue
108
primary cell
34
cell line
3
in vitro differentiated cells
Organ
499
connective tissue
424
pancreas
408
adipose tissue
249
liver
174
heart
163
epithelium
135
brain
74
blood vessel
74
vasculature
64
artery
58
bone element
24
kidney
14
embryo
11
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
416
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
410
hg19
408
GRCh38
Lab
417
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
261
6
3
1
body of pancreas
3
2
pancreas
1
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
1
in vitro differentiated cells
pancreatic PP cell
3
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