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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
2
pCHi-C
1
ChIP-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
134
May, 2022
19
September, 2020
2
March, 2020
1
October, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
153
primary cell
2
in vitro differentiated cells
1
tissue
Organ
80
epithelium
80
pancreas
1
brain
Project
153
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
153
Klaus Kaestner, Upenn
3
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
156 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
pCHi-C
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
medial globus pallidus
1
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