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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
287
ChIP-seq
Assay category
287
DNA binding
Target of assay
230
histone
230
histone modification
140
narrow histone mark
90
broad histone mark
52
control
5
transcription factor
Date released
90
May, 2021
66
August, 2017
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
6
October, 2017
2
February, 2021
Available data
2771
bam
2593
bigWig
1432
tsv
1295
bed narrowPeak
fastq
618
bigBed narrowPeak
314
tagAlign
225
bed bed3+
204
bed broadPeak
173
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
287
Homo sapiens
Biosample type
157
tissue
88
primary cell
40
in vitro differentiated cells
2
cell line
Organ
74
liver
44
brain
22
connective tissue
15
musculature of body
12
pancreas
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
heart
6
vasculature
1
pituitary gland
Project
203
AMP
84
T1D
Genome assembly (visualization)
192
hg19
165
GRCh38
Lab
203
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
month_released!
November, 2017
organ_slims!
heart
ureter
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
brain
6
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
iPSC derived cell line
2
See all biosamples
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