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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
10
total RNA-seq
2
pCHi-C
Assay category
20
DNA binding
10
Transcription
Target of assay
17
histone
17
histone modification
11
broad histone mark
6
narrow histone mark
3
control
Date released
20
August, 2017
9
August, 2021
1
February, 2020
1
March, 2020
1
May, 2020
Available data
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
32
Homo sapiens
Biosample type
22
tissue
10
cell line
Organ
98
heart
32
brain
32
liver
26
connective tissue
20
pancreas
18
musculature of body
12
kidney
11
adipose tissue
10
blood vessel
10
epithelium
10
vasculature
5
eye
4
artery
3
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
32
AMP
Lab
23
AMP-T2D consortium
9
Bing Ren, UCSD
files.file_type!
bam
month_released!
July, 2018
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
tissue
liver
20
1
right lobe of liver
1
cell line
HepG2
9
1
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