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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
total RNA-seq
43
single cell RNA-seq
19
ChIP-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
255
Transcription
19
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
3
control
1
transcription factor
Date released
July, 2018
105
August, 2017
43
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
536
bam
470
bigWig
432
fastq
264
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
276
Homo sapiens
Biosample type
175
tissue
71
primary cell
34
cell line
3
in vitro differentiated cells
Organ
498
connective tissue
409
adipose tissue
283
pancreas
260
liver
174
heart
144
brain
130
epithelium
blood vessel
74
vasculature
64
artery
58
bone element
24
kidney
24
musculature of body
14
embryo
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
275
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
269
hg19
261
GRCh38
Lab
276
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
July, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
283 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
145
6
9
1
pancreas
1
7
1
body of pancreas
3
2
primary cell
pancreatic alpha cell
10
5
6
pancreatic beta cell
10
3
pancreatic acinar cell
4
7
pancreatic ductal cell
4
7
pancreatic delta cell
7
+ See 2 more…
cell line
EndoC_BH1
33
1
in vitro differentiated cells
pancreatic PP cell
3
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