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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
325
ChIP-seq
Assay category
325
DNA binding
Target of assay
321
histone
321
histone modification
174
narrow histone mark
147
broad histone mark
control
4
transcription factor
Date released
89
May, 2021
74
August, 2017
67
November, 2017
40
October, 2019
27
May, 2020
16
August, 2021
12
October, 2017
February, 2021
Available data
2530
bigWig
2452
bam
1729
bed narrowPeak
1145
fastq
1038
tsv
978
bigBed narrowPeak
325
tagAlign
322
bed broadPeak
285
bigBed broadPeak
262
bed bed3+
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
319
Homo sapiens
Biosample type
186
tissue
98
primary cell
30
in vitro differentiated cells
11
cell line
Organ
99
brain
58
liver
19
connective tissue
16
pancreas
13
musculature of body
7
adipose tissue
5
epithelium
1
pituitary gland
Project
241
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
231
hg19
Lab
241
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
lab.title!
Xin Sun, UCSD
month_released!
April, 2019
February, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
tissue
liver
44
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
skeletal muscle tissue
13
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
adipocyte
12
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
11
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