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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
ChIP-seq
Assay category
261
DNA binding
Target of assay
206
histone
206
histone modification
104
narrow histone mark
102
broad histone mark
47
control
8
transcription factor
Date released
87
May, 2021
78
November, 2017
August, 2017
50
May, 2020
October, 2019
24
August, 2021
14
October, 2017
8
February, 2021
Available data
2353
bam
2234
bigWig
1328
bed narrowPeak
1167
tsv
863
bigBed narrowPeak
768
fastq
264
bed broadPeak
261
tagAlign
255
bigBed broadPeak
224
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
13
bedpe bed3+
12
bed bed3
12
hic
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
vcf
Organism
261
Homo sapiens
Biosample type
130
tissue
88
primary cell
23
in vitro differentiated cells
20
cell line
Organ
80
brain
66
liver
7
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
pancreas
Project
177
AMP
84
T1D
Genome assembly (visualization)
187
GRCh38
158
hg19
Lab
177
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
October, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
261 results
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ChIP-seq
tissue
liver
50
caudate nucleus
15
substantia nigra
15
brain
14
cingulate gyrus
14
+ See 2 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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