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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
Assay category
375
DNA binding
Target of assay
308
histone
308
histone modification
169
narrow histone mark
139
broad histone mark
63
control
4
transcription factor
Date released
90
May, 2021
78
November, 2017
70
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
February, 2021
Available data
2763
bam
2550
bigWig
1734
bed narrowPeak
1311
fastq
1031
tsv
995
bigBed narrowPeak
375
tagAlign
276
bed broadPeak
252
bigBed broadPeak
237
bed bed3+
153
zippedFastqFolder
70
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
18
bedpe bed3+
18
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
368
Homo sapiens
Biosample type
223
tissue
100
primary cell
40
in vitro differentiated cells
12
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
291
AMP
84
T1D
Genome assembly (visualization)
241
GRCh38
220
hg19
Lab
291
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
February, 2021
October, 2022
organ_slims!
musculature of body
thymus
BIOSAMPLE
ASSAY
375 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
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