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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
Assay category
302
DNA binding
Target of assay
236
histone
236
histone modification
133
narrow histone mark
103
broad histone mark
65
control
1
transcription factor
Date released
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
2
February, 2021
Available data
2929
bam
2710
bigWig
1551
bed narrowPeak
1358
tsv
1352
fastq
959
bigBed narrowPeak
305
bed broadPeak
302
tagAlign
268
bigBed broadPeak
258
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
295
Homo sapiens
Biosample type
238
tissue
34
in vitro differentiated cells
16
primary cell
14
cell line
Organ
118
brain
86
liver
22
connective tissue
16
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
vasculature
4
epithelium
1
pituitary gland
Project
302
AMP
Genome assembly (visualization)
153
GRCh38
145
hg19
Lab
302
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
January, 2021
May, 2021
organ_slims!
pericardium
vasculature
BIOSAMPLE
ASSAY
302 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
primary cell
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
iPSC derived cell line
2
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