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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
Assay category
224
DNA binding
Target of assay
199
histone
199
histone modification
110
narrow histone mark
89
broad histone mark
21
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
8
February, 2021
Available data
741
bam
730
bigWig
416
bed narrowPeak
287
fastq
274
tsv
224
tagAlign
66
bigBed narrowPeak
46
bed broadPeak
39
bed bed3+
20
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
108
tissue
96
primary cell
20
in vitro differentiated cells
Organ
38
brain
22
connective tissue
20
liver
19
pancreas
15
musculature of body
8
adipose tissue
3
epithelium
1
pituitary gland
Project
140
AMP
84
T1D
Genome assembly (visualization)
167
hg19
146
GRCh38
Lab
140
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent assembly
organ_slims!
limb
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
tissue
liver
20
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
pancreas
7
+ See 39 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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