Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
ChIP-seq
Assay category
306
DNA binding
Target of assay
263
histone
263
histone modification
134
narrow histone mark
129
broad histone mark
38
control
5
transcription factor
Date released
90
May, 2021
66
November, 2017
65
August, 2017
49
October, 2019
20
August, 2021
14
October, 2017
2
February, 2021
Available data
2492
bam
2323
bigWig
1257
tsv
1177
bed narrowPeak
893
fastq
590
bigBed narrowPeak
306
tagAlign
230
bed bed3+
229
bed broadPeak
192
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
18
hic
7
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
299
Homo sapiens
Biosample type
168
tissue
96
primary cell
40
in vitro differentiated cells
2
cell line
Organ
118
brain
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
heart
6
vasculature
1
pituitary gland
Project
222
AMP
84
T1D
Genome assembly (visualization)
211
GRCh38
192
hg19
Lab
222
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
heart
liver
skeleton
spinal cord
BIOSAMPLE
ASSAY
306 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
iPSC derived cell line
2
See all biosamples
Download