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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
Assay category
377
DNA binding
Target of assay
308
histone
308
histone modification
169
narrow histone mark
139
broad histone mark
64
control
5
transcription factor
Date released
90
May, 2021
78
November, 2017
70
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
2
February, 2021
Available data
3150
bam
2946
bigWig
1624
bed narrowPeak
1522
tsv
1350
fastq
912
bigBed narrowPeak
377
tagAlign
259
bed broadPeak
235
bigBed broadPeak
226
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
370
Homo sapiens
Biosample type
223
tissue
100
primary cell
40
in vitro differentiated cells
14
cell line
Organ
118
brain
86
liver
22
connective tissue
19
pancreas
musculature of body
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
6
heart
vasculature
1
pituitary gland
Project
293
AMP
84
T1D
Genome assembly (visualization)
242
GRCh38
221
hg19
Lab
293
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
mammary gland
musculature of body
vasculature
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
iPSC derived cell line
2
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