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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
2
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
5
February, 2023
1
October, 2022
Available data
3391
bam
3169
bigWig
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
158
Homo sapiens
Biosample type
157
tissue
1
cell line
1
in vitro differentiated cells
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
159
AMP
Genome assembly (visualization)
2
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
files.file_type!
bed narrowPeak
month_released!
March, 2019
BIOSAMPLE
ASSAY
159 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
cell line
MIN6
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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