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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
2
ChIP-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
2
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
RNA binding protein
Date released
89
February, 2021
57
August, 2021
February, 2023
7
May, 2022
2
November, 2017
1
October, 2022
Available data
3113
bam
2914
bigWig
1557
bed narrowPeak
1516
tsv
1191
fastq
874
bigBed narrowPeak
392
tagAlign
301
bed broadPeak
264
bigBed broadPeak
256
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
8
csv
4
bed bedgraph
3
cool
3
hdf5
2
bed bed3
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
155
Homo sapiens
Biosample type
153
tissue
3
cell line
Organ
84
bone element
62
kidney
6
pancreas
2
liver
blood vessel
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
156
AMP
Genome assembly (visualization)
3
hg19
Lab
93
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
month_released!
February, 2023
organ_slims!
blood vessel
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
156 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ChIP-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
cell line
HepG2
2
MIN6
1
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