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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
61
DNA accessibility
51
Transcription
41
DNA methylation
Date released
134
May, 2022
18
September, 2020
1
October, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
153
primary cell
Organ
81
epithelium
80
pancreas
1
blood vessel
1
vasculature
1
vein
Project
152
HPAP
1
AMP
Genome assembly (visualization)
1
hg19
Lab
152
Klaus Kaestner, Upenn
1
AMP-T2D consortium
files.file_type!
fastq
hdf5
BIOSAMPLE
ASSAY
153 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
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