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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
WGBS
3
total RNA-seq
1
ATAC-seq
1
RNA microarray
Assay category
6
DNA methylation
3
Transcription
1
DNA accessibility
Date released
6
February, 2021
2
February, 2023
1
December, 2019
1
February, 2020
1
March, 2020
Available data
bam
332
bigWig
257
fastq
178
bed narrowPeak
161
tsv
102
bigBed narrowPeak
80
zippedFastqFolder
24
bed broadPeak
24
bigBed broadPeak
23
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
11
Homo sapiens
Biosample type
6
primary cell
4
tissue
1
cell line
Organ
98
heart
14
brain
12
kidney
12
liver
11
pancreas
10
blood vessel
10
epithelium
10
vasculature
5
eye
4
artery
4
connective tissue
3
adipose tissue
3
limb
3
musculature of body
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
6
HPAP
5
AMP
Genome assembly (visualization)
1
hg19
Lab
6
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bam
month_released!
November, 2020
BIOSAMPLE
ASSAY
11 results
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Clear Filters
WGBS
total RNA-seq
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
6
tissue
pigmented layer of retina
2
renal glomerulus
1
tibial nerve
1
cell line
EndoC_BH1
1
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