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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
total RNA-seq
3
small RNA-seq
2
pCHi-C
Assay category
163
Transcription
Date released
144
May, 2020
7
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2020
1
October, 2019
Available data
681
bam
588
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
165
Homo sapiens
Biosample type
154
tissue
6
cell line
5
primary cell
Organ
478
connective tissue
410
pancreas
401
adipose tissue
168
heart
165
liver
150
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
162
GRCh38
162
hg19
Lab
165
AMP-T2D consortium
9
Bing Ren, UCSD
files.file_type!
bed bed3+
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
liver
147
1
1
right lobe of liver
3
2
cell line
HepG2
5
1
primary cell
hepatocyte
5
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