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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
5
single cell RNA-seq
4
small RNA-seq
2
pCHi-C
Assay category
82
Transcription
Target of assay
3
control
Date released
52
February, 2021
14
February, 2020
13
July, 2019
2
August, 2021
2
March, 2020
1
October, 2019
Available data
345
bam
307
bigWig
277
bed narrowPeak
152
bigBed narrowPeak
124
tagAlign
84
tsv
51
bed broadPeak
42
bigBed broadPeak
bed bed3+
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
84
Homo sapiens
Biosample type
52
cell line
27
tissue
5
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
66
GRCh38
66
hg19
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 14 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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