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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
5
single cell RNA-seq
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
214
Transcription
2
DNA accessibility
Date released
114
July, 2018
40
May, 2021
26
February, 2021
20
November, 2019
6
March, 2020
5
April, 2018
4
July, 2019
1
August, 2021
1
February, 2020
Available data
689
bam
623
bigWig
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
217
Homo sapiens
Biosample type
178
tissue
34
cell line
5
primary cell
Organ
475
connective tissue
401
adipose tissue
217
pancreas
169
liver
168
heart
68
blood vessel
68
vasculature
58
artery
58
bone element
54
epithelium
26
brain
24
kidney
10
embryo
9
musculature of body
7
limb
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
215
AMP
2
T1D
Genome assembly (visualization)
214
hg19
212
GRCh38
Lab
216
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
files.file_type!
fastq
month_released!
February, 2023
BIOSAMPLE
ASSAY
217 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
170
1
body of pancreas
3
2
pancreas
1
1
cell line
EndoC_BH1
33
1
primary cell
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
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