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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1176total RNA-seq
  • 113single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1307Transcription
  • 14DNA accessibility
Target of assay
  • 3control
Date released
  • 553February, 2021
  • 189May, 2020
  • 173May, 2021
  • 123August, 2021
  • 114July, 2018
  • 65July, 2019
  • 45March, 2020
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 9December, 2019
  • 5April, 2018
  • 4November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1357Homo sapiens
Biosample type
  • 979tissue
  • 144primary cell
  • 116in vitro differentiated cells
  • 114cell line
  • 4stem cell
Organ
  • 475connective tissue
  • 401adipose tissue
  • 217pancreas
  • 169liver
  • 168heart
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 56epithelium
  • 26brain
  • 24kidney
  • 10embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1259AMP
  • 98T1D
Genome assembly (visualization)
  • 1165hg19
  • 1163GRCh38
Lab
  • 1251AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 143inconsistent ontology term
  • 9audit script error
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1357 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans1701
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
hepatocyte5
osteoblast5
gabaergic neuron3
glutamatergic neuron3
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG291
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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