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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
5
single cell RNA-seq
3
snDrop-seq
Assay category
550
Transcription
Date released
553
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
572
bam
553
tsv
551
bigWig
89
txt
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
553
Homo sapiens
Biosample type
452
tissue
78
cell line
22
in vitro differentiated cells
1
primary cell
Organ
449
connective tissue
386
adipose tissue
58
bone element
52
artery
52
blood vessel
52
heart
52
vasculature
26
epithelium
26
pancreas
8
kidney
Project
553
AMP
Genome assembly (visualization)
545
GRCh38
545
hg19
Lab
553
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
5
audit script error
files.file_type!
vcf
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
553 results
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total RNA-seq
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
26
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
osteoblast
1
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