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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
total RNA-seq
8
single cell RNA-seq
6
WGBS
Assay category
169
Transcription
6
DNA methylation
Date released
67
August, 2021
51
May, 2021
45
May, 2020
6
February, 2021
6
May, 2022
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
4
bed bed3+
4
hic
bed bedgraph
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
175
Homo sapiens
Biosample type
102
primary cell
64
tissue
9
cell line
Organ
57
kidney
13
pancreas
9
liver
6
epithelium
Project
96
T1D
73
AMP
6
HPAP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
AMP-T2D consortium
102
Kyle Gaulton, UCSD
57
Katalin Susztak, Upenn
10
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
files.file_type!
bed bedgraph
lab.title!
AMP-T2D consortium
month_released!
October, 2022
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
single cell RNA-seq
WGBS
primary cell
monocyte
53
pancreatic alpha cell
6
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
kidney
49
8
islet of Langerhans
7
cell line
HepG2
9
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