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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
323
total RNA-seq
80
single cell RNA-seq
47
WGBS
39
ATAC-seq
2
small RNA-seq
Assay category
405
Transcription
47
DNA methylation
39
DNA accessibility
Date released
153
July, 2018
89
August, 2017
80
May, 2022
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
683
bam
613
bigWig
471
fastq
411
tsv
211
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
491
Homo sapiens
Biosample type
272
tissue
188
primary cell
31
cell line
Organ
491
pancreas
476
connective tissue
400
adipose tissue
233
epithelium
172
liver
163
heart
66
blood vessel
66
vasculature
58
artery
58
bone element
24
brain
22
kidney
14
embryo
7
limb
6
musculature of body
5
eye
5
nerve
1
pericardium
1
spinal cord
Project
405
AMP
86
HPAP
Genome assembly (visualization)
403
GRCh38
403
hg19
Lab
404
AMP-T2D consortium
86
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
36
inconsistent ontology term
month_released!
March, 2020
organ_slims!
large intestine
BIOSAMPLE
ASSAY
491 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
tissue
islet of Langerhans
261
6
body of pancreas
3
2
primary cell
pancreatic alpha cell
10
12
31
22
pancreatic beta cell
10
12
16
13
pancreatic acinar cell
4
12
4
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
31
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