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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1300total RNA-seq
  • 185single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 1snATAC-seq
Assay category
  • 1503Transcription
  • 15DNA accessibility
Target of assay
  • 3control
Date released
  • 553February, 2021
  • 189May, 2020
  • 173May, 2021
  • 156July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 45March, 2020
  • 32April, 2018
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 2June, 2018
  • 2October, 2018
  • 1July, 2025
Available data
  • 3183bam
  • 3010bigWig
  • 1691bed narrowPeak
  • 1554tsv
  • 1125fastq
  • 940bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 272bed bed3+
  • 155txt
  • 151zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1553Homo sapiens
Biosample type
  • 1077tissue
  • 238primary cell
  • 119cell line
  • 116in vitro differentiated cells
  • 4stem cell
Organ
  • 478connective tissue
  • 401adipose tissue
  • 393pancreas
  • 174liver
  • 168heart
  • 132epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 10embryo
  • 10musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1456AMP
  • 98T1D
Genome assembly (visualization)
  • 1361hg19
  • 1360GRCh38
Lab
  • 1447AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 150inconsistent ontology term
  • 9audit script error
files.read_length!
  • 100
BIOSAMPLE
ASSAY

1554 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
snATAC-seq
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic alpha cell108
pancreatic beta cell108
pancreatic acinar cell411
pancreatic ductal cell47
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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