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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
5
small RNA-seq
4
pCHi-C
Assay category
180
Transcription
Date released
144
May, 2020
11
July, 2019
9
August, 2021
6
March, 2020
5
December, 2019
5
January, 2019
3
February, 2020
1
October, 2019
Available data
738
bam
690
bigWig
501
bed narrowPeak
467
fastq
405
bigBed narrowPeak
184
tsv
109
bed broadPeak
101
tagAlign
96
bigBed broadPeak
47
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
tar
1
bed bed3
1
csv
1
hdf5
1
txt
1
vcf
Organism
184
Homo sapiens
Biosample type
162
tissue
15
cell line
7
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
184
AMP
Genome assembly (visualization)
168
GRCh38
168
hg19
Lab
175
AMP-T2D consortium
9
Bing Ren, UCSD
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
184 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
liver
147
1
1
right lobe of liver
3
2
psoas muscle
2
1
skeletal muscle tissue
1
1
gastrocnemius medialis
1
+ See 2 more…
cell line
HepG2
14
1
primary cell
hepatocyte
5
skeletal muscle satellite cell
1
1
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