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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
80
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
368
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
621
bam
580
bigWig
447
fastq
377
tsv
193
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
377
Homo sapiens
Biosample type
239
tissue
108
primary cell
30
cell line
Organ
477
connective tissue
401
adipose tissue
377
pancreas
174
liver
165
heart
150
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
12
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
369
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
368
hg19
366
GRCh38
Lab
370
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
35
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2021
May, 2022
BIOSAMPLE
ASSAY
377 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
225
6
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
29
1
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