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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
total RNA-seq
80
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
2
small RNA-seq
Assay category
362
Transcription
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
February, 2021
26
September, 2018
November, 2019
7
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
610
bam
566
bigWig
465
fastq
366
tsv
183
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
5
bedpe bed3+
5
hic
3
cool
1
bedpe
1
hdf5
Organism
366
Homo sapiens
Biosample type
257
tissue
102
primary cell
7
cell line
Organ
365
pancreas
174
liver
123
epithelium
116
heart
29
connective tissue
26
brain
16
blood vessel
16
kidney
16
vasculature
15
adipose tissue
14
embryo
9
musculature of body
7
limb
6
artery
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
364
AMP
2
T1D
Genome assembly (visualization)
362
hg19
360
GRCh38
Lab
365
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
month_released!
February, 2021
November, 2019
BIOSAMPLE
ASSAY
366 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
tissue
islet of Langerhans
242
6
1
body of pancreas
3
2
pancreas
1
1
sigmoid colon
1
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
6
1
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