Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 770total RNA-seq
  • 206single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 2RNA microarray
Assay category
  • 994Transcription
  • 14DNA accessibility
Target of assay
  • 3control
Date released
  • February, 2021
  • 189May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 45March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 2820bam
  • 2618bigWig
  • 1794bed narrowPeak
  • 1313fastq
  • 1042bigBed narrowPeak
  • 1041tsv
  • 390tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 153zippedFastqFolder
  • 72txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 10bed bed3
  • 5hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1041Homo sapiens
Biosample type
  • 624tissue
  • 263primary cell
  • 109in vitro differentiated cells
  • 41cell line
  • 4stem cell
Organ
  • 385pancreas
  • 174liver
  • 124epithelium
  • 116heart
  • 29connective tissue
  • 26brain
  • 16blood vessel
  • 16kidney
  • 16vasculature
  • 15adipose tissue
  • 14embryo
  • 9musculature of body
  • 7limb
  • 6artery
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 943AMP
  • 98T1D
Genome assembly (visualization)
  • 857hg19
  • 855GRCh38
Lab
  • 935AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 106inconsistent ontology term
  • 4audit script error
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

1041 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
RNA microarray
tissue
islet of Langerhans26161
liver14711
heart left ventricle3181
heart right ventricle1171
right cardiac atrium181
primary cell
monocyte53
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
pancreatic endoderm4
cell line
HepG2141
EndoC_BH171
H1-hESC8
RCC 7860 vector11
early embryonic cell2
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego