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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1271total RNA-seq
  • 208single cell RNA-seq
  • 31pCHi-C
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1479Transcription
  • 14DNA accessibility
  • 6DNA methylation
Date released
  • 559February, 2021
  • 189May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • July, 2019
  • 49April, 2018
  • 45March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3310bam
  • 3084bigWig
  • 1810bed narrowPeak
  • 1535tsv
  • 1358fastq
  • 1040bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 23bedpe bed3+
  • 23hic
  • 13bed bedMethyl
  • 13bigBed bedMethyl
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1535Homo sapiens
Biosample type
  • 1029tissue
  • 252primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 462connective tissue
  • 413pancreas
  • 389adipose tissue
  • 167liver
  • 157heart
  • 151epithelium
  • 63blood vessel
  • 63vasculature
  • 58bone element
  • 56artery
  • 18kidney
  • 15brain
  • 14embryo
  • 7limb
  • 5eye
  • 5musculature of body
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1431AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 1337hg19
  • 1335GRCh38
Lab
  • 1423AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 150inconsistent ontology term
  • 9audit script error
month_released!
  • July, 2019
BIOSAMPLE
ASSAY

1535 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver1451
bone tissue58
heart left ventricle1181
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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