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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1302total RNA-seq
  • 211single cell RNA-seq
  • 18small RNA-seq
  • 12ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
  • 1pCHi-C
Assay category
  • 1531Transcription
  • 12DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 559February, 2021
  • 189May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3376bam
  • 3149bigWig
  • 1814bed narrowPeak
  • 1555tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 13hic
  • 12bed bed3
  • 11bedpe bed3+
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1555Homo sapiens
Biosample type
  • 1048tissue
  • 270primary cell
  • 127in vitro differentiated cells
  • 110cell line
Organ
  • 476connective tissue
  • 411pancreas
  • 400adipose tissue
  • 172liver
  • 163heart
  • 153epithelium
  • 66blood vessel
  • 66vasculature
  • 58artery
  • 58bone element
  • 24brain
  • 22kidney
  • 14embryo
  • 7limb
  • 6musculature of body
  • 5eye
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1453AMP
  • 96T1D
  • 6HPAP
Genome assembly (visualization)
  • 1387GRCh38
  • 1387hg19
Lab
  • 1443AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 139inconsistent ontology term
  • 9audit script error
month_released!
  • March, 2020
BIOSAMPLE
ASSAY

1555 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
pCHi-C
tissue
adipose tissue381
islet of Langerhans2616
liver1461
bone tissue58
heart left ventricle218
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte4
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG2141
H1-hESC8
RCC 7860 HIF1a re-expression1
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