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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1142total RNA-seq
  • 211single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1371Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 559February, 2021
  • 189May, 2020
  • May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 45March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3115bam
  • 2866bigWig
  • 1684bed narrowPeak
  • 1427tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 322bed broadPeak
  • 308tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1427Homo sapiens
Biosample type
  • 1038tissue
  • 218primary cell
  • 115cell line
  • 52in vitro differentiated cells
  • 4stem cell
Organ
  • 477connective tissue
  • 401adipose tissue
  • 377pancreas
  • 174liver
  • 165heart
  • 150epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 12embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1374AMP
  • 47T1D
  • 6HPAP
Genome assembly (visualization)
  • 1229hg19
  • 1227GRCh38
Lab
  • 1366AMP-T2D consortium
  • 45Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 81inconsistent ontology term
  • 9audit script error
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

1427 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans22561
liver14711
bone tissue58
heart left ventricle3181
primary cell
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1291
HepG2141
H1-hESC8
RCC 7860 vector11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)19
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)221
adipocyte4
pancreatic endoderm4
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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