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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
4
single cell RNA-seq
1
pCHi-C
Assay category
76
Transcription
Date released
63
February, 2021
4
July, 2019
4
November, 2020
2
April, 2018
2
July, 2018
1
March, 2020
1
May, 2021
Available data
151
bam
145
bigWig
77
tsv
62
bed narrowPeak
57
fastq
21
bed bed3+
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
77
Homo sapiens
Biosample type
58
tissue
13
primary cell
5
in vitro differentiated cells
1
stem cell
Organ
478
connective tissue
adipose tissue
391
pancreas
174
liver
168
heart
130
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
76
GRCh38
76
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
September, 2017
September, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
single cell RNA-seq
pCHi-C
tissue
bone tissue
58
primary cell
osteoblast
5
pancreatic stellate cell
4
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
mesangial cell
1
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in vitro differentiated cells
adipocyte
4
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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