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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
total RNA-seq
50
single cell RNA-seq
30
pCHi-C
14
ATAC-seq
2
RNA microarray
Assay category
188
Transcription
14
DNA accessibility
Date released
559
February, 2021
189
May, 2020
173
May, 2021
164
July, 2018
123
August, 2021
89
August, 2017
65
July, 2019
49
April, 2018
45
March, 2020
26
September, 2018
25
February, 2020
20
November, 2019
16
February, 2023
16
October, 2019
15
February, 2018
9
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
234
tsv
192
bigWig
185
bam
126
fastq
68
bed narrowPeak
12
bedpe bed3+
10
bed bed3
10
hic
7
txt
4
bed bed3+
3
bed bedgraph
2
ibed
Organism
234
Homo sapiens
Biosample type
150
tissue
65
primary cell
9
cell line
6
in vitro differentiated cells
4
stem cell
Organ
159
pancreas
44
epithelium
7
liver
5
heart
4
connective tissue
4
eye
4
kidney
3
musculature of body
2
blood vessel
2
brain
2
intestine
2
vasculature
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
232
AMP
2
T1D
Genome assembly (visualization)
184
hg19
182
GRCh38
Lab
234
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
234 results
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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
RNA microarray
tissue
islet of Langerhans
116
1
psoas muscle
2
1
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 20 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
hepatocyte
5
pancreatic acinar cell
5
pancreatic delta cell
4
+ See 15 more…
cell line
EndoC_BH1
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
embryonic stem cell
1
lymphocyte of B lineage (iPSC)
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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