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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1298total RNA-seq
  • 208single cell RNA-seq
  • 29pCHi-C
  • 14ATAC-seq
  • 14small RNA-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1520Transcription
  • 14DNA accessibility
  • 6DNA methylation
Date released
  • 559February, 2021
  • 189May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 54July, 2019
  • 49April, 2018
  • 43March, 2020
  • 26September, 2018
  • 20November, 2019
  • 16February, 2023
  • 15February, 2018
  • 15October, 2019
  • 13February, 2020
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3149bam
  • 2947bigWig
  • 1614bed narrowPeak
  • 1574tsv
  • 1337fastq
  • 915bigBed narrowPeak
  • 280tagAlign
  • 275bed broadPeak
  • 247bigBed broadPeak
  • 238bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2hdf5
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1574Homo sapiens
Biosample type
  • 1053tissue
  • 267primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 168heart
  • 156epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1470AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 1390hg19
  • 1388GRCh38
Lab
  • 1462AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 149inconsistent ontology term
  • 9audit script error
organ_slims!
  • brain
BIOSAMPLE
ASSAY

1574 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
small RNA-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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